]> git.donarmstrong.com Git - mothur.git/blobdiff - deconvolutecommand.h
added cluster.split command
[mothur.git] / deconvolutecommand.h
index b6bda8faa00a274369e7a23803440025c241e612..9c8fd22d702f8a8b98ee12d682d6f880e5c1fb0e 100644 (file)
 class DeconvoluteCommand : public Command {
 
 public:
-       DeconvoluteCommand(string);     
-       ~DeconvoluteCommand() { delete fastamap; };
+       DeconvoluteCommand(string);
+       ~DeconvoluteCommand() { };
        int execute();
        void help();    
        
 private:
-       FastaMap* fastamap;
-       ifstream in;
-       ofstream out, outFasta;
-       string filename, outputFileName, outFastafile;
+       string inFastaName, oldNameMapFName, outputDir;
 
        bool abort;
 };