class DeconvoluteCommand : public Command {
public:
- DeconvoluteCommand(string);
- ~DeconvoluteCommand() { };
- int execute();
- void help();
+ DeconvoluteCommand(string);
+ DeconvoluteCommand();
+ ~DeconvoluteCommand() {}
+
+ vector<string> setParameters();
+ string getCommandName() { return "unique.seqs"; }
+ string getCommandCategory() { return "Sequence Processing"; }
+ string getOutputFileNameTag(string, string);
+ string getHelpString();
+ string getCitation() { return "http://www.mothur.org/wiki/Unique.seqs"; }
+ string getDescription() { return "creates a fasta containing the unique sequences as well as a namesfile with the names each sequence represents"; }
+
+
+ int execute();
+ void help() { m->mothurOut(getHelpString()); }
+
private:
string inFastaName, oldNameMapFName, outputDir;
+ vector<string> outputNames;
bool abort;
};