#include "command.hpp"
#include "fastamap.h"
+#include "counttable.h"
/* The unique.seqs command reads a fasta file, finds the duplicate sequences and outputs a names file
containing 2 columns. The first being the groupname and the second the list of identical sequence names. */
private:
- string inFastaName, oldNameMapFName, outputDir;
+ string inFastaName, oldNameMapFName, outputDir, countfile;
vector<string> outputNames;
bool abort;