v 19.3

[mothur.git] / deconvolutecommand.h

diff --git a/deconvolutecommand.h b/deconvolutecommand.h
index 4cb6aac3e0c9cd23d7b1d11ed40b775d43d4d42d..21a008190fdc168a9259c1abe4f8461c99fc87cd 100644 (file)
--- a/deconvolutecommand.h
+++ b/deconvolutecommand.h
@@ -19,13 +19,23 @@
 class DeconvoluteCommand : public Command {
 
 public:
-       DeconvoluteCommand(string);     
-       ~DeconvoluteCommand() { };
-       int execute();
-       void help();    
+       DeconvoluteCommand(string);
+       DeconvoluteCommand();
+       ~DeconvoluteCommand() {}
+       
+       vector<string> setParameters();
+       string getCommandName()                 { return "unique.seqs";         }
+       string getCommandCategory()             { return "Sequence Processing";         }
+       string getHelpString(); 
+       string getCitation() { return "http://www.mothur.org/wiki/Unique.seqs"; }
+       
+       int execute(); 
+       void help() { m->mothurOut(getHelpString()); }  
+       
        
 private:
        string inFastaName, oldNameMapFName, outputDir;
+       vector<string> outputNames;
 
        bool abort;
 };