use hash and file position in deconvolute

[mothur.git] / deconvolutecommand.h

diff --git a/deconvolutecommand.h b/deconvolutecommand.h
index e514bdae70f7e0b51854b40baacf44d2b0174c8a..36343064db2879e690ada12d97b04cfa8f8b7c8e 100644 (file)
--- a/deconvolutecommand.h
+++ b/deconvolutecommand.h
@@ -12,6 +12,7 @@
 #include "command.hpp"
 #include "fastamap.h"
 #include "counttable.h"
+#include "sequence.hpp"
 
 /* The unique.seqs command reads a fasta file, finds the duplicate sequences and outputs a names file
        containing 2 columns.  The first being the groupname and the second the list of identical sequence names. */ 
@@ -45,4 +46,9 @@ private:
        bool abort;
 };
 
+multimap<size_t,std::pair<std::streampos,string>>::iterator
+  in_fasta_from_hash_map(multimap<size_t,pair<streampos,string>>&,
+                            Sequence&,
+                            ifstream&);
+
 #endif