}
CountTable ct;
if (countfile != "") {
- ct.readTable(countfile);
+ ct.readTable(countfile, true, false);
if (countfile == outCountFile){
//prepare filenames and open files
map<string, string> mvariables;
m->gobble(in);
- if(count % 1000 == 0) { m->mothurOut(toString(count) + "\t" + toString(sequenceStrings.size())); m->mothurOutEndLine(); }
+ if(count % 1000 == 0) { m->mothurOutJustToScreen(toString(count) + "\t" + toString(sequenceStrings.size()) + "\n"); }
}
if(count % 1000 != 0) { m->mothurOut(toString(count) + "\t" + toString(sequenceStrings.size())); m->mothurOutEndLine(); }