added otu.association command. added calcSpearman, calcKendall and calcPearson functi...

[mothur.git] / database.hpp

diff --git a/database.hpp b/database.hpp
index f974ae966ed5f85c1136ed59a0c82b79f2f847d2..b2817a779dc1b95070ef77fbe6e8bf5b11159a3c 100644 (file)
--- a/database.hpp
+++ b/database.hpp
@@ -45,6 +45,7 @@ class Database {
 
 public:
        Database();
+       Database(const Database& db) : numSeqs(db.numSeqs), longest(db.longest), searchScore(db.searchScore), results(db.results), Scores(db.Scores) { m = MothurOut::getInstance(); }
        virtual ~Database();
        virtual void generateDB() = 0; 
        virtual void addSequence(Sequence) = 0;  //add sequence to search engine
@@ -57,7 +58,8 @@ public:
        virtual void readKmerDB(ifstream&){};
        virtual void setNumSeqs(int i) {        numSeqs = i;    }
        virtual vector<int> getSequencesWithKmer(int){ vector<int> filler; return filler; };  
-       virtual int getMaxKmer(){       return 1;       };
+       virtual int getReversed(int) { return 0; } 
+       virtual int getMaxKmer(){       return 1;       }
        
 protected:
        MothurOut* m;