modified mpi code to save ram by writing out every 10 seqs.

[mothur.git] / database.hpp

diff --git a/database.hpp b/database.hpp
index 79050777acd7d695754d7a382741538d35409b94..994c84505f4594a4794e0279343fd82f1214b983 100644 (file)
--- a/database.hpp
+++ b/database.hpp
@@ -48,7 +48,7 @@ public:
        virtual void generateDB() = 0; 
        virtual void addSequence(Sequence) = 0;  //add sequence to search engine
        virtual vector<int> findClosestSequences(Sequence*, int) = 0;  // returns indexes of n closest sequences to query
-       virtual map<int, float> findClosest(Sequence*, int){ return results; }  // returns of n closest sequences to query and their search scores
+       virtual vector<int> findClosestMegaBlast(Sequence*, int){return results;}
        virtual float getSearchScore();
        virtual int getLongestBase(); 
        virtual void readKmerDB(ifstream&){};
@@ -58,9 +58,10 @@ public:
 
        
 protected:
+       MothurOut* m;
        int numSeqs, longest;
        float searchScore;
-       map<int, float> results;
+       vector<int> results;
 };
 /**************************************************************************************************/
 #endif