version 1.4

[mothur.git] / database.hpp

diff --git a/database.hpp b/database.hpp
index e497fa42fea869d84502387638279a8a9896bbab..02cad03d0e34e33fac8324541266758d91f8693d 100644 (file)
--- a/database.hpp
+++ b/database.hpp
@@ -10,14 +10,23 @@
  *
  */
 
+
+/* This class is a parent to blastdb, distancedb, kmerdb, suffixdb.  Which are used to convert a squencedb object into that form. */
+
+#include "mothur.h"
+
+class Sequence;
+
 class Database {
 public:
        Database(string);
-       virtual Sequence* findClosestSequence(Sequence*) = 0;
-       
+       virtual ~Database();
+       virtual Sequence findClosestSequence(Sequence*) = 0;
+       virtual float getSearchScore();
 protected:
        int numSeqs;
-       vector<Sequence*> templateSequences;    
+       float searchScore;
+       vector<Sequence> templateSequences;
 };
 
 #endif