made sorting optional but sort by default, in case the user wants to see the heatmap...

[mothur.git] / coverage.h

diff --git a/coverage.h b/coverage.h
index c556bb206c821d5b8c3245ca09fc0ff1b4a8bc21..b4dccf73e65d57f77b1f94c271340ba40a4d62fd 100644 (file)
--- a/coverage.h
+++ b/coverage.h
@@ -21,14 +21,14 @@ using namespace std;
 class Coverage  {
        
        public: 
-               Coverage(){};
+               Coverage();
                ~Coverage(){};
-               vector< vector<float> > getValues(FullMatrix*, float);  
+               void getValues(FullMatrix*, vector< vector< vector<float> > >&, vector<float>, string); //matrix, container for results, vector of distances, mode - for random matrices
+               void getValues(FullMatrix*, vector< vector< vector<float> > >&, vector<float>); //for user matrix
                
        private:
                GlobalData* globaldata;
-               vector< vector<float> > data;
-               int numGroups;
+               int numGroups, numUserGroups;
 
 };