#include "mothurout.h"
+#include "listvector.hpp"
class CountTable {
int getGroupIndex(string); //returns index in getGroupCounts vector of specific group
vector<string> getNamesOfSeqs();
int mergeCounts(string, string); //combines counts for 2 seqs, saving under the first name passed in.
+ int get(string); //returns unique sequence index for reading distance matrices like NameAssignment
+ ListVector getListVector();
+ int size() { return indexNameMap.size(); }
private:
string filename;