*/
#include "command.hpp"
-#include "sharedrabundvector.h"
#include "sharedrabundfloatvector.h"
#include "inputdata.h"
+
class CorrAxesCommand : public Command {
public:
CorrAxesCommand(string);
void help();
private:
+
+
GlobalData* globaldata;
- string axesfile, sharedfile, relabundfile, groups, label, inputFileName, outputDir, method;
+ string axesfile, sharedfile, relabundfile, metadatafile, groups, label, inputFileName, outputDir, method;
bool abort, pickedGroups;
int numaxes;
set<string> names;
vector<string> outputNames, Groups;
map<string, vector<string> > outputTypes;
- vector<SharedRAbundVector*> lookup;
vector<SharedRAbundFloatVector*> lookupFloat;
+ vector<string> metadataLabels;
- int getShared();
- int getSharedFloat();
- int convertToRelabund();
+ int getSharedFloat(InputData*);
+ int getMetadata();
int eliminateZeroOTUS(vector<SharedRAbundFloatVector*>&);
map<string, vector<float> > readAxes();
int calcPearson(map<string, vector<float> >&, ofstream&);
+ int calcSpearman(map<string, vector<float> >&, ofstream&);
+ int calcKendall(map<string, vector<float> >&, ofstream&);
};