public:
CorrAxesCommand(string);
CorrAxesCommand();
- ~CorrAxesCommand();
- vector<string> getRequiredParameters();
- vector<string> getValidParameters();
- vector<string> getRequiredFiles();
- map<string, vector<string> > getOutputFiles() { return outputTypes; }
- int execute();
- void help();
-
-private:
+ ~CorrAxesCommand(){}
+ vector<string> setParameters();
+ string getCommandName() { return "corr.axes"; }
+ string getCommandCategory() { return "Hypothesis Testing"; }
+ string getHelpString();
- GlobalData* globaldata;
+ int execute();
+ void help() { m->mothurOut(getHelpString()); }
+private:
+
string axesfile, sharedfile, relabundfile, metadatafile, groups, label, inputFileName, outputDir, method;
bool abort, pickedGroups;
int numaxes;
set<string> names;
vector<string> outputNames, Groups;
- map<string, vector<string> > outputTypes;
vector<SharedRAbundFloatVector*> lookupFloat;
vector<string> metadataLabels;