if (m->control_pressed) { return 0; }
if (namefile != "") { readNames(); }
- if (countfile != "") { ct.readTable(countfile, true); }
+ if (countfile != "") { ct.readTable(countfile, true, false); }
if (m->control_pressed) { return 0; }
outSummary << "OTU#\tPositioninAlignment\tA\tT\tG\tC\tGap\tNumberofSeqs\tConsensusBase" << endl;
string snumBins = toString(list->getNumBins());
+ vector<string> binLabels = list->getLabels();
for (int i = 0; i < list->getNumBins(); i++) {
if (m->control_pressed) { outSummary.close(); outName.close(); outFasta.close(); return 0; }
string bin = list->get(i);
string consSeq = getConsSeq(bin, outSummary, i);
-
- string seqName = "Otu";
- string sbinNumber = toString(i+1);
- if (sbinNumber.length() < snumBins.length()) {
- int diff = snumBins.length() - sbinNumber.length();
- for (int h = 0; h < diff; h++) { seqName += "0"; }
- }
- seqName += sbinNumber;
- outFasta << ">" << seqName << endl << consSeq << endl;
- outName << seqName << '\t' << seqName << "," << bin << endl;
+ outFasta << ">" << binLabels[i] << endl << consSeq << endl;
+ outName << binLabels[i] << '\t' << binLabels[i] << "," << bin << endl;
}
outSummary.close(); outName.close(); outFasta.close();