added otu.association command. added calcSpearman, calcKendall and calcPearson functi...

[mothur.git] / consensuscommand.cpp

diff --git a/consensuscommand.cpp b/consensuscommand.cpp
index 75c6a3c6755badbcf1d4fba294a8811b24edbafc..e522b098f0703d6909f1906c3039fb4459e99854 100644 (file)
--- a/consensuscommand.cpp
+++ b/consensuscommand.cpp
@@ -32,7 +32,7 @@ string ConcensusCommand::getHelpString(){
                helpString += "The .consensus.tre file contains the consensus tree of the trees in your input file.\n";
                helpString += "The branch lengths are the percentage of trees in your input file that had the given pair.\n";
                helpString += "The .consensuspairs file contains a list of the internal nodes in your tree.  For each node, the pair that was used in the consensus tree \n";
-               helpString += "is reported with its percentage, as well as the other pairs that were seen for that node but not used and their percentages.\n\n";               
+               helpString += "is reported with its percentage, as well as the other pairs that were seen for that node but not used and their percentages.\n";         
                return helpString;
        }
        catch(exception& e) {
@@ -82,6 +82,7 @@ int ConcensusCommand::execute(){
                
                if (abort == true) { if (calledHelp) { return 0; }  return 2;   }
                
+               
                m->mothurOut("This command is not currently in use."); m->mothurOutEndLine();
        /*      
                t = globaldata->gTree;