]> git.donarmstrong.com Git - mothur.git/blobdiff - commandoptionparser.hpp
you can now use a distance matrix as input for the heatmap.sim command.
[mothur.git] / commandoptionparser.hpp
index 6a616289e024cb0656e338e0a73f7aed31c98c1c..44df8f7619a0e8cb4ab39717934c04524337c346 100644 (file)
@@ -1,15 +1,18 @@
 #ifndef COMMANDOPTIONPARSER_HPP
 #define COMMANDOPTIONPARSER_HPP
 
+#include "mothur.h"
+
 //**********************************************************************************************************************
 
 class CommandOptionParser {
 public:
        CommandOptionParser(string);
        string getCommandString();
+       string getOptionString();
        
 private:
-       string commandString;
+       string commandString, optionString;
 };
 
 //**********************************************************************************************************************