added otu.association command. added calcSpearman, calcKendall and calcPearson functi...

[mothur.git] / commandoptionparser.cpp

diff --git a/commandoptionparser.cpp b/commandoptionparser.cpp
index df216da738e7ba6dd92ec0817c6353b0b1723870..e356afe5c74972e5298ddfa87a0672c97c4facfe 100644 (file)
--- a/commandoptionparser.cpp
+++ b/commandoptionparser.cpp
@@ -8,7 +8,6 @@
  */
 
 
-#include "globaldata.hpp"
 #include "commandoptionparser.hpp"
 
 
@@ -27,8 +26,8 @@ CommandOptionParser::CommandOptionParser(string input){
                        commandString = input.substr(0, openParen);   //commandString contains everything before "("
                        optionString = input.substr((openParen+1), (closeParen-openParen-1)); //optionString contains everything between "(" and ")".
                }
-               else if (openParen == -1) { m->mothurOut("You are missing ("); m->mothurOutEndLine(); }
-               else if (closeParen == -1) { m->mothurOut("You are missing )"); m->mothurOutEndLine(); }
+               else if (openParen == -1) { m->mothurOut("[ERROR]: You are missing ("); m->mothurOutEndLine(); }
+               else if (closeParen == -1) { m->mothurOut("[ERROR]:You are missing )"); m->mothurOutEndLine(); }
                                        
                //GlobalData* globaldata = GlobalData::getInstance();
                //globaldata->parseGlobalData(commandString, optionString);                     //parser to separate and check options