modified mpi code to save ram by writing out every 10 seqs.

[mothur.git] / commandfactory.hpp

diff --git a/commandfactory.hpp b/commandfactory.hpp
index d84be62a074dde5dc29b8006a636bd7b67b9607d..6f96e90b4813e961222c60f9bb7390188d19c3e5 100644 (file)
--- a/commandfactory.hpp
+++ b/commandfactory.hpp
@@ -11,6 +11,7 @@
  */
 
 #include "mothur.h"
+#include "mothurout.h";
 
 class Command;
 
@@ -24,9 +25,11 @@ public:
        void setOutputDirectory(string o)       {       outputDir = o;          }
        void setInputDirectory(string i)        {       inputDir = i;           }
        string getOutputDir()                           {       return outputDir;       }
+       bool MPIEnabled(string);
 
 private:
        Command* command;
+       MothurOut* m;
        map<string, string> commands;
        map<string, string>::iterator it;
        string outputDir, inputDir;