modified some calculators and other stuff - pds

[mothur.git] / commandfactory.cpp

diff --git a/commandfactory.cpp b/commandfactory.cpp
index 354b5a3ba4de65d6576e408ff880930a11c0c1e0..ff156139ea3f3c1d67791d440113177fc261a700 100644 (file)
--- a/commandfactory.cpp
+++ b/commandfactory.cpp
@@ -32,9 +32,11 @@
 #include "libshuffcommand.h"
 #include "heatmapcommand.h"
 #include "venncommand.h"
-#include "mothur.h"
 #include "nocommands.h"
 #include "binsequencecommand.h"
+#include "getoturepcommand.h"
+#include "treegroupscommand.h"
+#include "bootstrapsharedcommand.h"
 
 
 /***********************************************************/
@@ -81,6 +83,9 @@ Command* CommandFactory::getCommand(string commandName){
                else if(commandName == "heatmap")                               {   command = new HeatMapCommand();                             }
                else if(commandName == "venn")                                  {   command = new VennCommand();                                }
                else if(commandName == "bin.seqs")                              {   command = new BinSeqCommand();                              }
+               else if(commandName == "get.oturep")                    {   command = new GetOTURepCommand();                   }
+               else if(commandName == "tree.shared")                   {   command = new TreeGroupCommand();                   }
+               else if(commandName == "bootstrap.shared")              {   command = new BootSharedCommand();                  }
                else                                                                                    {       command = new NoCommand();                                      }
 
                return command;