#include "cooccurrencecommand.h"
#include "pcrseqscommand.h"
#include "createdatabasecommand.h"
+#include "makebiomcommand.h"
+#include "getcoremicrobiomecommand.h"
/*******************************************************/
commands["cooccurrence"] = "cooccurrence";
commands["pcr.seqs"] = "pcr.seqs";
commands["create.database"] = "create.database";
+ commands["make.biom"] = "make.biom";
+ commands["get.coremicrobiome"] = "get.coremicrobiome";
commands["quit"] = "MPIEnabled";
}
else if(commandName == "cooccurrence") { command = new CooccurrenceCommand(optionString); }
else if(commandName == "pcr.seqs") { command = new PcrSeqsCommand(optionString); }
else if(commandName == "create.database") { command = new CreateDatabaseCommand(optionString); }
+ else if(commandName == "make.biom") { command = new MakeBiomCommand(optionString); }
+ else if(commandName == "get.coremicrobiome") { command = new GetCoreMicroBiomeCommand(optionString); }
else { command = new NoCommand(optionString); }
return command;
else if(commandName == "cooccurrence") { pipecommand = new CooccurrenceCommand(optionString); }
else if(commandName == "pcr.seqs") { pipecommand = new PcrSeqsCommand(optionString); }
else if(commandName == "create.database") { pipecommand = new CreateDatabaseCommand(optionString); }
+ else if(commandName == "make.biom") { pipecommand = new MakeBiomCommand(optionString); }
+ else if(commandName == "get.coremicrobiome") { pipecommand = new GetCoreMicroBiomeCommand(optionString); }
else { pipecommand = new NoCommand(optionString); }
return pipecommand;
else if(commandName == "cooccurrence") { shellcommand = new CooccurrenceCommand(); }
else if(commandName == "pcr.seqs") { shellcommand = new PcrSeqsCommand(); }
else if(commandName == "create.database") { shellcommand = new CreateDatabaseCommand(); }
+ else if(commandName == "make.biom") { shellcommand = new MakeBiomCommand(); }
+ else if(commandName == "get.coremicrobiome") { shellcommand = new GetCoreMicroBiomeCommand(); }
else { shellcommand = new NoCommand(); }
return shellcommand;