#include "readdistcommand.h"
#include "readtreecommand.h"
#include "readotucommand.h"
-#include "readseqscommand.h"
#include "clustercommand.h"
#include "parselistcommand.h"
#include "collectcommand.h"
#include "treegroupscommand.h"
#include "bootstrapsharedcommand.h"
#include "concensuscommand.h"
+#include "distancecommand.h"
+#include "aligncommand.h"
/***********************************************************/
if(commandName == "read.dist") { command = new ReadDistCommand(); }
else if(commandName == "read.otu") { command = new ReadOtuCommand(); }
- else if(commandName == "read.seqs") { command = new ReadSeqsCommand(); }
else if(commandName == "read.tree") { command = new ReadTreeCommand(); }
else if(commandName == "cluster") { command = new ClusterCommand(); }
else if(commandName == "deconvolute") { command = new DeconvoluteCommand(); }
else if(commandName == "tree.shared") { command = new TreeGroupCommand(); }
else if(commandName == "bootstrap.shared") { command = new BootSharedCommand(); }
else if(commandName == "concensus") { command = new ConcensusCommand(); }
+ else if(commandName == "dist.seqs") { command = new DistanceCommand(); }
+ else if(commandName == "align.seqs") { command = new AlignCommand(); }
else { command = new NoCommand(); }
return command;