#include "classifysharedcommand.h"
#include "filtersharedcommand.h"
#include "primerdesigncommand.h"
+#include "getdistscommand.h"
+#include "removedistscommand.h"
+#include "mergetaxsummarycommand.h"
+#include "getmetacommunitycommand.h"
+#include "sparcccommand.h"
+#include "makelookupcommand.h"
+#include "renameseqscommand.h"
/*******************************************************/
commands["quit"] = "MPIEnabled";
commands["classify.shared"] = "classify.shared";
commands["filter.shared"] = "filter.shared";
- commands["primer.design"] = "primer.design";
+ commands["primer.design"] = "primer.design";
+ commands["get.dists"] = "get.dists";
+ commands["remove.dists"] = "remove.dists";
+ commands["merge.taxsummary"] = "merge.taxsummary";
+ commands["get.metacommunity"] = "get.metacommunity";
+ commands["sparcc"] = "sparcc";
+ commands["make.lookup"] = "make.lookup";
+ commands["rename.seqs"] = "rename.seqs";
}
else if(commandName == "classify.shared") { command = new ClassifySharedCommand(optionString); }
else if(commandName == "filter.shared") { command = new FilterSharedCommand(optionString); }
else if(commandName == "primer.design") { command = new PrimerDesignCommand(optionString); }
+ else if(commandName == "get.dists") { command = new GetDistsCommand(optionString); }
+ else if(commandName == "remove.dists") { command = new RemoveDistsCommand(optionString); }
+ else if(commandName == "merge.taxsummary") { command = new MergeTaxSummaryCommand(optionString); }
+ else if(commandName == "get.metacommunity") { command = new GetMetaCommunityCommand(optionString); }
+ else if(commandName == "sparcc") { command = new SparccCommand(optionString); }
+ else if(commandName == "make.lookup") { command = new MakeLookupCommand(optionString); }
+ else if(commandName == "rename.seqs") { command = new RenameSeqsCommand(optionString); }
else { command = new NoCommand(optionString); }
return command;
else if(commandName == "classify.shared") { pipecommand = new ClassifySharedCommand(optionString); }
else if(commandName == "filter.shared") { pipecommand = new FilterSharedCommand(optionString); }
else if(commandName == "primer.design") { pipecommand = new PrimerDesignCommand(optionString); }
+ else if(commandName == "get.dists") { pipecommand = new GetDistsCommand(optionString); }
+ else if(commandName == "remove.dists") { pipecommand = new RemoveDistsCommand(optionString); }
+ else if(commandName == "merge.taxsummary") { pipecommand = new MergeTaxSummaryCommand(optionString); }
+ else if(commandName == "get.metacommunity") { pipecommand = new GetMetaCommunityCommand(optionString); }
+ else if(commandName == "sparcc") { pipecommand = new SparccCommand(optionString); }
+ else if(commandName == "make.lookup") { pipecommand = new MakeLookupCommand(optionString); }
+ else if(commandName == "rename.seqs") { pipecommand = new RenameSeqsCommand(optionString); }
else { pipecommand = new NoCommand(optionString); }
return pipecommand;
else if(commandName == "classify.shared") { shellcommand = new ClassifySharedCommand(); }
else if(commandName == "filter.shared") { shellcommand = new FilterSharedCommand(); }
else if(commandName == "primer.design") { shellcommand = new PrimerDesignCommand(); }
+ else if(commandName == "get.dists") { shellcommand = new GetDistsCommand(); }
+ else if(commandName == "remove.dists") { shellcommand = new RemoveDistsCommand(); }
+ else if(commandName == "merge.taxsummary") { shellcommand = new MergeTaxSummaryCommand(); }
+ else if(commandName == "get.metacommunity") { shellcommand = new GetMetaCommunityCommand(); }
+ else if(commandName == "sparcc") { shellcommand = new SparccCommand(); }
+ else if(commandName == "make.lookup") { shellcommand = new MakeLookupCommand(); }
+ else if(commandName == "rename.seqs") { shellcommand = new RenameSeqsCommand(); }
else { shellcommand = new NoCommand(); }
return shellcommand;