#include "sffinfocommand.h"
#include "seqerrorcommand.h"
#include "normalizesharedcommand.h"
+#include "metastatscommand.h"
+#include "splitgroupscommand.h"
+#include "clusterfragmentscommand.h"
+#include "getlineagecommand.h"
+#include "removelineagecommand.h"
/*******************************************************/
commands["get.relabund"] = "get.relabund";
commands["sffinfo"] = "sffinfo";
commands["normalize.shared"] = "normalize.shared";
+ commands["metastats"] = "metastats";
+ commands["split.groups"] = "split.groups";
+ commands["cluster.fragments"] = "cluster.fragments";
+ commands["get.lineage"] = "get.lineage";
+ commands["remove.lineage"] = "remove.lineage";
commands["classify.seqs"] = "MPIEnabled";
commands["dist.seqs"] = "MPIEnabled";
commands["filter.seqs"] = "MPIEnabled";
else if(commandName == "seq.error") { command = new SeqErrorCommand(optionString); }
else if(commandName == "sffinfo") { command = new SffInfoCommand(optionString); }
else if(commandName == "normalize.shared") { command = new NormalizeSharedCommand(optionString); }
+ else if(commandName == "metastats") { command = new MetaStatsCommand(optionString); }
+ else if(commandName == "split.groups") { command = new SplitGroupCommand(optionString); }
+ else if(commandName == "cluster.fragments") { command = new ClusterFragmentsCommand(optionString); }
+ else if(commandName == "get.lineage") { command = new GetLineageCommand(optionString); }
+ else if(commandName == "remove.lineage") { command = new RemoveLineageCommand(optionString); }
else { command = new NoCommand(optionString); }
return command;