#include "removeotulabelscommand.h"
#include "makecontigscommand.h"
#include "loadlogfilecommand.h"
+#include "sffmultiplecommand.h"
+#include "classifysharedcommand.h"
/*******************************************************/
commands["make.contigs"] = "make.contigs";
commands["load.logfile"] = "load.logfile";
commands["make.table"] = "make.table";
+ commands["sff.multiple"] = "sff.multiple";
commands["quit"] = "MPIEnabled";
+ commands["classify.shared"] = "classify.shared";
+
}
/***********************************************************/
else if(commandName == "remove.otulabels") { command = new RemoveOtuLabelsCommand(optionString); }
else if(commandName == "make.contigs") { command = new MakeContigsCommand(optionString); }
else if(commandName == "load.logfile") { command = new LoadLogfileCommand(optionString); }
+ else if(commandName == "sff.multiple") { command = new SffMultipleCommand(optionString); }
+ else if(commandName == "classify.shared") { command = new ClassifySharedCommand(optionString); }
else { command = new NoCommand(optionString); }
return command;
else if(commandName == "remove.otulabels") { pipecommand = new RemoveOtuLabelsCommand(optionString); }
else if(commandName == "make.contigs") { pipecommand = new MakeContigsCommand(optionString); }
else if(commandName == "load.logfile") { pipecommand = new LoadLogfileCommand(optionString); }
+ else if(commandName == "sff.multiple") { pipecommand = new SffMultipleCommand(optionString); }
+ else if(commandName == "classify.shared") { pipecommand = new ClassifySharedCommand(optionString); }
else { pipecommand = new NoCommand(optionString); }
return pipecommand;
else if(commandName == "remove.otulabels") { shellcommand = new RemoveOtuLabelsCommand(); }
else if(commandName == "make.contigs") { shellcommand = new MakeContigsCommand(); }
else if(commandName == "load.logfile") { shellcommand = new LoadLogfileCommand(); }
+ else if(commandName == "sff.multiple") { shellcommand = new SffMultipleCommand(); }
+ else if(commandName == "classify.shared") { shellcommand = new ClassifySharedCommand(); }
else { shellcommand = new NoCommand(); }
return shellcommand;