#include "getrelabundcommand.h"
#include "sensspeccommand.h"
#include "sffinfocommand.h"
+#include "seqerrorcommand.h"
+#include "normalizesharedcommand.h"
+#include "metastatscommand.h"
+#include "splitgroupscommand.h"
+#include "clusterfragmentscommand.h"
/*******************************************************/
commands["degap.seqs"] = "degap.seqs";
commands["get.relabund"] = "get.relabund";
commands["sffinfo"] = "sffinfo";
+ commands["normalize.shared"] = "normalize.shared";
+ commands["metastats"] = "metastats";
+ commands["split.groups"] = "split.groups";
+ commands["cluster.fragments"] = "cluster.fragments";
commands["classify.seqs"] = "MPIEnabled";
commands["dist.seqs"] = "MPIEnabled";
commands["filter.seqs"] = "MPIEnabled";
commands["summary.seqs"] = "MPIEnabled";
commands["cluster.split"] = "MPIEnabled";
commands["sens.spec"] = "sens.spec";
+ commands["seq.error"] = "seq.error";
commands["quit"] = "MPIEnabled";
}
else if(commandName == "degap.seqs") { command = new DegapSeqsCommand(optionString); }
else if(commandName == "get.relabund") { command = new GetRelAbundCommand(optionString); }
else if(commandName == "sens.spec") { command = new SensSpecCommand(optionString); }
+ else if(commandName == "seq.error") { command = new SeqErrorCommand(optionString); }
else if(commandName == "sffinfo") { command = new SffInfoCommand(optionString); }
+ else if(commandName == "normalize.shared") { command = new NormalizeSharedCommand(optionString); }
+ else if(commandName == "metastats") { command = new MetaStatsCommand(optionString); }
+ else if(commandName == "split.groups") { command = new SplitGroupCommand(optionString); }
+ else if(commandName == "cluster.fragments") { command = new ClusterFragmentsCommand(optionString); }
else { command = new NoCommand(optionString); }
return command;