#include "getgroupscommand.h"
#include "getotuscommand.h"
#include "removeotuscommand.h"
+#include "indicatorcommand.h"
/*******************************************************/
commands["get.groups"] = "get.groups";
commands["get.otus"] = "get.otus";
commands["remove.otus"] = "remove.otus";
+ commands["indicator"] = "indicator";
commands["pairwise.seqs"] = "MPIEnabled";
commands["pipeline.pds"] = "MPIEnabled";
commands["classify.seqs"] = "MPIEnabled";
else if(commandName == "pairwise.seqs") { command = new PairwiseSeqsCommand(optionString); }
else if(commandName == "cluster.classic") { command = new ClusterDoturCommand(optionString); }
else if(commandName == "sub.sample") { command = new SubSampleCommand(optionString); }
+ else if(commandName == "indicator") { command = new IndicatorCommand(optionString); }
else { command = new NoCommand(optionString); }
return command;
else if(commandName == "pairwise.seqs") { pipecommand = new PairwiseSeqsCommand(optionString); }
else if(commandName == "cluster.classic") { pipecommand = new ClusterDoturCommand(optionString); }
else if(commandName == "sub.sample") { pipecommand = new SubSampleCommand(optionString); }
+ else if(commandName == "indicator") { pipecommand = new IndicatorCommand(optionString); }
else { pipecommand = new NoCommand(optionString); }
return pipecommand;
else if(commandName == "pairwise.seqs") { shellcommand = new PairwiseSeqsCommand(); }
else if(commandName == "cluster.classic") { shellcommand = new ClusterDoturCommand(); }
else if(commandName == "sub.sample") { shellcommand = new SubSampleCommand(); }
+ else if(commandName == "indicator") { shellcommand = new IndicatorCommand(); }
else { shellcommand = new NoCommand(); }
return shellcommand;