#include "bootstrapsharedcommand.h"
#include "concensuscommand.h"
#include "distancecommand.h"
+#include "aligncommand.h"
+#include "getrepseqscommand.h"
+#include "matrixoutputcommand.h"
/***********************************************************/
else if(commandName == "filter.seqs") { command = new FilterSeqsCommand(); }
else if(commandName == "venn") { command = new VennCommand(); }
else if(commandName == "bin.seqs") { command = new BinSeqCommand(); }
+ else if(commandName == "get.repseqs") { command = new GetRepSeqsCommand(); }
else if(commandName == "get.oturep") { command = new GetOTURepCommand(); }
else if(commandName == "tree.shared") { command = new TreeGroupCommand(); }
+ else if(commandName == "dist.shared") { command = new MatrixOutputCommand(); }
else if(commandName == "bootstrap.shared") { command = new BootSharedCommand(); }
else if(commandName == "concensus") { command = new ConcensusCommand(); }
- else if(commandName == "dist.seq") { command = new DistanceCommand(); }
+ else if(commandName == "dist.seqs") { command = new DistanceCommand(); }
+ else if(commandName == "align.seqs") { command = new AlignCommand(); }
else { command = new NoCommand(); }
return command;