#include "summarycommand.h"
#include "summarysharedcommand.h"
#include "rarefactsharedcommand.h"
-#include "nocommand.h"
#include "quitcommand.h"
#include "helpcommand.h"
#include "commandfactory.hpp"
#include "parsimonycommand.h"
#include "unifracunweightedcommand.h"
#include "unifracweightedcommand.h"
+#include "libshuffcommand.h"
+#include "heatmapcommand.h"
+#include "filterseqscommand.h"
#include "mothur.h"
+#include "venncommand.h"
+#include "nocommands.h"
+#include "binsequencecommand.h"
+#include "getoturepcommand.h"
+#include "treegroupscommand.h"
+#include "bootstrapsharedcommand.h"
+#include "concensuscommand.h"
+#include "distancecommand.h"
+#include "aligncommand.h"
+#include "matrixoutputcommand.h"
/***********************************************************/
CommandFactory::CommandFactory(){
command = new NoCommand();
}
-
/***********************************************************/
/***********************************************************/
else if(commandName == "summary.shared") { command = new SummarySharedCommand(); }
else if(commandName == "unifrac.weighted") { command = new UnifracWeightedCommand(); }
else if(commandName == "unifrac.unweighted") { command = new UnifracUnweightedCommand(); }
- else if(commandName == "get.group") { command = new GetgroupCommand(); }
- else if(commandName == "get.label") { command = new GetlabelCommand(); }
- else if(commandName == "get.line") { command = new GetlineCommand(); }
+ else if(commandName == "get.group") { command = new GetgroupCommand(); }
+ else if(commandName == "get.label") { command = new GetlabelCommand(); }
+ else if(commandName == "get.line") { command = new GetlineCommand(); }
+ else if(commandName == "libshuff") { command = new LibShuffCommand(); }
+ else if(commandName == "heatmap") { command = new HeatMapCommand(); }
+ else if(commandName == "filter.seqs") { command = new FilterSeqsCommand(); }
+ else if(commandName == "venn") { command = new VennCommand(); }
+ else if(commandName == "bin.seqs") { command = new BinSeqCommand(); }
+ else if(commandName == "get.oturep") { command = new GetOTURepCommand(); }
+ else if(commandName == "tree.shared") { command = new TreeGroupCommand(); }
+ else if(commandName == "dist.shared") { command = new MatrixOutputCommand(); }
+ else if(commandName == "bootstrap.shared") { command = new BootSharedCommand(); }
+ else if(commandName == "concensus") { command = new ConcensusCommand(); }
+ else if(commandName == "dist.seqs") { command = new DistanceCommand(); }
+ else if(commandName == "align.seqs") { command = new AlignCommand(); }
else { command = new NoCommand(); }
return command;