moved mothur's source into a folder to make grabbing just the source easier on github

[mothur.git] / command.hpp

diff --git a/command.hpp b/command.hpp
deleted file mode 100644 (file)
index 22f1181..0000000
--- a/command.hpp
+++ /dev/null
@@ -1,54 +0,0 @@
-#ifndef COMMAND_HPP
-#define COMMAND_HPP
-//test2
-/*
- *  command.h
- *  
- *
- *  Created by Pat Schloss on 10/23/08.
- *  Copyright 2008 Patrick D. Schloss. All rights reserved.
- *
- */
-
-/*This class is a parent to all the command classes.  */
-
-
-#include "mothur.h"
-#include "optionparser.h"
-#include "validparameter.h"
-#include "mothurout.h"
-#include "commandparameter.h"
-
-
-class Command {
-       
-       public:
-               Command() {  m = MothurOut::getInstance();   } 
-               
-               //needed by gui
-               virtual string getCommandName() = 0;
-               virtual string getCommandCategory() = 0;
-               virtual string getHelpString() = 0;
-               virtual string getCitation() = 0;
-               virtual string getDescription() = 0;
-               
-               virtual map<string, vector<string> > getOutputFiles() { return outputTypes; }
-               virtual vector<string> setParameters() = 0; //to fill parameters
-               virtual vector<CommandParameter> getParameters() { return parameters; }
-       
-               virtual int execute() = 0;
-               virtual void help() = 0;
-               void citation() { m->mothurOutEndLine(); m->mothurOut(getCitation()); m->mothurOutEndLine(); }
-               virtual ~Command() { }
-       
-       protected:
-               MothurOut* m;
-               bool calledHelp;
-                       
-               map<string, vector<string> > outputTypes;
-               vector<CommandParameter> parameters;
-       
-               map<string, vector<string> >::iterator itTypes;
-};
-
-#endif