added code to format fast files for uchime. started work on sff.multiple command

[mothur.git] / collectsharedcommand.h

diff --git a/collectsharedcommand.h b/collectsharedcommand.h
index 3eb56fefeaa9e8d26df18df66941d33f8e12a8d3..d0908de54afb261e4e8184efd6910c3238848d2b 100644 (file)
--- a/collectsharedcommand.h
+++ b/collectsharedcommand.h
@@ -29,9 +29,11 @@ public:
        vector<string> setParameters();
        string getCommandName()                 { return "collect.shared";                      }
        string getCommandCategory()             { return "OTU-Based Approaches";        }
+       string getOutputFileNameTag(string, string);
        string getHelpString(); 
        string getCitation() { return "Schloss PD, Handelsman J (2006). Introducing SONS, A tool that compares the membership of microbial communities. Appl Environ Microbiol 72: 6773-9. \nhttp://www.mothur.org/wiki/Collect.shared"; }
-       
+       string getDescription()         { return "generates collector's curves for calculators, which describe the similarity between communities or their shared richness"; }
+
        int execute(); 
        void help() { m->mothurOut(getHelpString()); }