//figure out what groups are being compared in getValues
//because we randomizes the order we need to put the results in the correct column in the output file
int group1Index, group2Index, pos;
- group1Index = shared[0]->getGroupIndex();
- group2Index = shared[1]->getGroupIndex();
+
+ vector<string> mGroups = m->getGroups();
+ for (int i = 0; i < mGroups.size(); i++) {
+ if (shared[0]->getGroup() == mGroups[i]) { group1Index = i; }
+ if (shared[1]->getGroup() == mGroups[i]) { group2Index = i; }
+ }
numGroupComb = 0;
int n = 1;
}
n++;
}
-
+
if ((estimate->getMultiple() == true) && all) {
numGroupComb++;
groupData.resize((numGroupComb*data.size()), 0);
output->output(numSeqs, groupData);
}
};
-
+
void init(string s) { output->initFile(s); };
void reset() { output->resetFile(); };
void close() { output->resetFile(); };
void setAll(bool a) { all = a; }
bool getAll() { return all; }
- bool isCalcMultiple() { return estimate->getMultiple(); }
+
+ bool isCalcMultiple() { return estimate->getMultiple(); }
+ bool calcNeedsAll() { return estimate->getNeedsAll(); }
+ bool hasLciHci() {
+ if (estimate->getCols() == 3) { return true; }
+ else{ return false; }
+ }
string getName() { return estimate->getName(); }