modified freq parameter be a percentage of numSeqs, added catchall command - not...

[mothur.git] / collectcommand.h

diff --git a/collectcommand.h b/collectcommand.h
index 10894e7218b5d2d607f2c0fa931f7c10a0f6146d..773bdae5c1d0b71bdad01e4403d3af3702274e70 100644 (file)
--- a/collectcommand.h
+++ b/collectcommand.h
@@ -50,12 +50,17 @@ private:
        Collect* cCurve;
        ValidCalculators* validCalculator;
        vector<Display*> cDisplays;
-       int freq, abund, size;
+       int abund, size;
+       float freq;
 
        bool abort, allLines;
        set<string> labels; //holds labels to be used
-       string label, calc;
+       string label, calc, outputDir;
        vector<string>  Estimators;
+       vector<string> inputFileNames;
+       vector<string> groups;
+       
+       vector<string> parseSharedFile(string);
 
 
 };