added cluster.split command

[mothur.git] / collectcommand.cpp

diff --git a/collectcommand.cpp b/collectcommand.cpp
index cf8ba10e8e43054304c42892cbfb9c2014a8da1f..88be43b9a283b3313eacb6093ffe4f496c6bc452 100644 (file)
--- a/collectcommand.cpp
+++ b/collectcommand.cpp
@@ -110,6 +110,7 @@ void CollectCommand::help(){
                m->mothurOut("The collect.single command can be executed after a successful cluster command.  It will use the .list file from the output of the cluster.\n");
                m->mothurOut("The collect.single command parameters are label, freq, calc and abund.  No parameters are required. \n");
                m->mothurOut("The collect.single command should be in the following format: \n");
+               m->mothurOut("The freq parameter is used indicate when to output your data, by default it is set to 100. But you can set it to a percentage of the number of sequence. For example freq=0.10, means 10%. \n");
                m->mothurOut("collect.single(label=yourLabel, iters=yourIters, freq=yourFreq, calc=yourEstimators).\n");
                m->mothurOut("Example collect(label=unique-.01-.03, iters=10000, freq=10, calc=sobs-chao-ace-jack).\n");
                m->mothurOut("The default values for freq is 100, and calc are sobs-chao-ace-jack-shannon-npshannon-simpson.\n");