vector<int> processIDS; //processid
vector<string> outputNames;
- string method, fileroot, tag, outputDir, phylipfile, columnfile, namefile, distfile, format, showabund, timing, splitmethod, taxFile;
+ string method, fileroot, tag, outputDir, phylipfile, columnfile, namefile, distfile, format, showabund, timing, splitmethod, taxFile, fastafile;
double cutoff, splitcutoff;
int precision, length, processors, taxLevelCutoff;
- bool print_start, abort, hard;
+ bool print_start, abort, hard, large;
time_t start;
ofstream outList, outRabund, outSabund;
int createProcesses(vector < vector < map<string, string> > >);
vector<string> cluster(vector< map<string, string> >, set<string>&);
int mergeLists(vector<string>, map<float, int>, ListVector*);
- map<float, int> completeListFile(vector<string>, string, set<string>, ListVector*&);
+ map<float, int> completeListFile(vector<string>, string, set<string>&, ListVector*&);
};
#endif