added weightedlinkage.cpp

[mothur.git] / clustersplitcommand.h

diff --git a/clustersplitcommand.h b/clustersplitcommand.h
index 4d1f4358ccf94382af1bb513e5cfaf10d87c8f34..c696329af7c14c1ff4252e3496a4905dd3faf2d4 100644 (file)
--- a/clustersplitcommand.h
+++ b/clustersplitcommand.h
@@ -32,17 +32,18 @@ private:
        vector<int> processIDS;   //processid
        vector<string> outputNames;
 
-       string method, fileroot, tag, outputDir, phylipfile, columnfile, namefile, distfile, format, showabund, timing;
+       string method, fileroot, tag, outputDir, phylipfile, columnfile, namefile, distfile, format, showabund, timing, splitmethod, taxFile;
        double cutoff, splitcutoff;
-       int precision, length, processors;
-       bool print_start, abort, hard;
+       int precision, length, processors, taxLevelCutoff;
+       bool print_start, abort, hard, large;
        time_t start;
        ofstream outList, outRabund, outSabund;
        
        void printData(ListVector*);
        int createProcesses(vector < vector < map<string, string> > >);
        vector<string> cluster(vector< map<string, string> >, set<string>&);
-       int mergeLists(vector<string>, string, set<string>);
+       int mergeLists(vector<string>, map<float, int>, ListVector*);
+       map<float, int> completeListFile(vector<string>, string, set<string>&, ListVector*&);
 };
 
 #endif