#include "listvector.hpp"
#include "cluster.hpp"
#include "sparsematrix.hpp"
-#include "globaldata.hpp"
class ClusterSplitCommand : public Command {
public:
ClusterSplitCommand(string);
ClusterSplitCommand();
- ~ClusterSplitCommand();
- vector<string> getRequiredParameters();
- vector<string> getValidParameters();
- vector<string> getRequiredFiles();
- map<string, vector<string> > getOutputFiles() { return outputTypes; }
- int execute();
- void help();
+ ~ClusterSplitCommand() {}
+ vector<string> setParameters();
+ string getCommandName() { return "cluster.split"; }
+ string getCommandCategory() { return "Clustering"; }
+ string getHelpString();
+
+ int execute();
+ void help() { m->mothurOut(getHelpString()); }
+
private:
- GlobalData* globaldata;
vector<int> processIDS; //processid
vector<string> outputNames;
- map<string, vector<string> > outputTypes;
-
+
string method, fileroot, tag, outputDir, phylipfile, columnfile, namefile, distfile, format, showabund, timing, splitmethod, taxFile, fastafile;
double cutoff, splitcutoff;
int precision, length, processors, taxLevelCutoff;