added debug statements to trim.seqs

[mothur.git] / clusterfragmentscommand.h

diff --git a/clusterfragmentscommand.h b/clusterfragmentscommand.h
index 2b0294782550a1da8885bbcd73aa10a046b7376b..c322529f3bedf95600a8b30e0ac013be2870d290 100644 (file)
--- a/clusterfragmentscommand.h
+++ b/clusterfragmentscommand.h
@@ -37,8 +37,10 @@ public:
        vector<string> setParameters();
        string getCommandName()                 { return "cluster.fragments";           }
        string getCommandCategory()             { return "Sequence Processing";         }
+       string getOutputFileNameTag(string, string);
        string getHelpString(); 
        string getCitation() { return "http://www.mothur.org/wiki/Cluster.fragments"; }
+       string getDescription()         { return "creates a namesfile with sequences that are a fragment of a larger sequence"; }
        
        int execute(); 
        void help() { m->mothurOut(getHelpString()); }