working on removing pointers from chimera.slayer to eliminate pesky memory leaks

[mothur.git] / clusterfragmentscommand.cpp

diff --git a/clusterfragmentscommand.cpp b/clusterfragmentscommand.cpp
index baea496ccb8b2b95aac764028493be1e51a302d1..2e37e7caedc35b67609e7c27e263261abd6f88f9 100644 (file)
--- a/clusterfragmentscommand.cpp
+++ b/clusterfragmentscommand.cpp
@@ -58,7 +58,7 @@ string ClusterFragmentsCommand::getHelpString(){
                helpString += "The cluster.fragments command should be in the following format: \n";
                helpString += "cluster.fragments(fasta=yourFastaFile, names=yourNamesFile) \n";
                helpString += "Example cluster.fragments(fasta=amazon.fasta).\n";
-               helpString += "Note: No spaces between parameter labels (i.e. fasta), '=' and parameters (i.e.yourFasta).\n\n";
+               helpString += "Note: No spaces between parameter labels (i.e. fasta), '=' and parameters (i.e.yourFasta).\n";
                return helpString;
        }
        catch(exception& e) {
@@ -87,6 +87,7 @@ ClusterFragmentsCommand::ClusterFragmentsCommand(string option) {
                
                //allow user to run help
                if(option == "help") { help(); abort = true; calledHelp = true; }
+               else if(option == "citation") { citation(); abort = true; calledHelp = true;}
                
                else {
                        vector<string> myArray = setParameters();