delete nameMap;
}else if (countfile != "") {
ct = new CountTable();
- ct->readTable(countfile);
+ ct->readTable(countfile, false, false);
cluster->readPhylipFile(phylipfile, ct);
delete ct;
}else {
map<string, string> variables;
variables["[filename]"] = fileroot;
- if (countfile != "") { variables["[tag2]"] = "unique_list"; }
variables["[clustertag]"] = tag;
string sabundFileName = getOutputFileName("sabund", variables);
string rabundFileName = getOutputFileName("rabund", variables);
+ if (countfile != "") { variables["[tag2]"] = "unique_list"; }
string listFileName = getOutputFileName("list", variables);
if (countfile == "") {
}
m->openOutputFile(listFileName, listFile);
outputNames.push_back(listFileName); outputTypes["list"].push_back(listFileName);
+ list->printHeaders(listFile);
float previousDist = 0.00000;
float rndPreviousDist = 0.00000;