committing so I can work on the other machine

[mothur.git] / clustercommand.h

diff --git a/clustercommand.h b/clustercommand.h
index ad9fe85d9977f4c3ffb74d65bfa58ecc995f710c..c8e01749de20baac9fe523e9cbf0b5f158b35941 100644 (file)
--- a/clustercommand.h
+++ b/clustercommand.h
@@ -29,7 +29,7 @@
 class ClusterCommand : public Command {
        
 public:
-       ClusterCommand(string); 
+       ClusterCommand(string);
        ~ClusterCommand();
        int execute();  
        void help();
@@ -43,9 +43,9 @@ private:
        RAbundVector oldRAbund;
        ListVector oldList;
 
-       bool abort;
+       bool abort, hard;
 
-       string method, fileroot, tag;
+       string method, fileroot, tag, outputDir;
        double cutoff;
        string showabund, timing;
        int precision, length;
@@ -56,6 +56,7 @@ private:
        unsigned long loops;
        
        void printData(string label);
+       vector<string> outputNames;
 };
 
 #endif