vector<string> setParameters();
string getCommandName() { return "cluster"; }
string getCommandCategory() { return "Clustering"; }
+ string getOutputFileNameTag(string, string);
string getHelpString();
string getCitation() { return "Schloss PD, Westcott SL (2011). Assessing and improving methods used in OTU-based approaches for 16S rRNA gene sequence analysis. Appl Environ Microbiol. \nhttp://www.mothur.org/wiki/Cluster"; }
+ string getDescription() { return "cluster your sequences into OTUs using a distance matrix"; }
int execute();
void help() { m->mothurOut(getHelpString()); }