*
*/
-#include <Carbon/Carbon.h>
-#include <iostream>
-#include <fstream>
#include "command.hpp"
+#include "globaldata.hpp"
#include "rabundvector.hpp"
+#include "sabundvector.hpp"
#include "listvector.hpp"
#include "cluster.hpp"
#include "sparsematrix.hpp"
class ClusterCommand : public Command {
public:
- ClusterCommand();
+ ClusterCommand(string);
~ClusterCommand();
int execute();
+ void help();
private:
GlobalData* globaldata;
RAbundVector* rabund;
RAbundVector oldRAbund;
ListVector oldList;
-
+
+ bool abort;
+
string method, fileroot, tag;
double cutoff;
int precision, length;
void printData(string label);
};
-#endif
\ No newline at end of file
+#endif