forced rarefaction.single to output ending line for all groups. added subsample...

[mothur.git] / clustercommand.h

diff --git a/clustercommand.h b/clustercommand.h
index 368760ac9465c231674b84de2ffffa5b714382f2..268ec315a81e1bbbcbd80051986703f3e02f03d4 100644 (file)
--- a/clustercommand.h
+++ b/clustercommand.h
@@ -32,9 +32,11 @@ public:
        ~ClusterCommand();
        
        vector<string> setParameters();
-       string getCommandName()                 { return "cluster";                                     }
-       string getCommandCategory()             { return "OTU-Based Approaches";        }
+       string getCommandName()                 { return "cluster";             }
+       string getCommandCategory()             { return "Clustering";  }
        string getHelpString(); 
+       string getCitation() { return "Schloss PD, Westcott SL (2011). Assessing and improving methods used in OTU-based approaches for 16S rRNA gene sequence analysis. Appl Environ Microbiol. \nhttp://www.mothur.org/wiki/Cluster"; }
+       string getDescription()         { return "cluster your sequences into OTUs using a distance matrix"; }
        
        int execute(); 
        void help() { m->mothurOut(getHelpString()); }