read->read(nameMap);
}else if (countfile != "") {
ct = new CountTable();
- ct->readTable(countfile, false);
+ ct->readTable(countfile, false, false);
read->read(ct);
}else { read->read(nameMap); }
}
m->openOutputFile(listFileName, listFile);
outputNames.push_back(listFileName); outputTypes["list"].push_back(listFileName);
-
+ list->printHeaders(listFile);
time_t estart = time(NULL);
float previousDist = 0.00000;