int col;
int row;
double dist;
- colDist(int i, int r, double d) : row(r), col(i), dist(d) {}
+ colDist(int r, int c, double d) : row(r), col(c), dist(d) {}
};
RAbundVector* rabund;
ListVector* list;
vector< vector<double> > dMatrix;
- vector<colDist> rowSmallDists;
+ //vector<colDist> rowSmallDists;
int smallRow;
int smallCol, nseqs;
double smallDist;
bool mapWanted;
- float cutoff;
+ double cutoff, aboveCutoff;
map<string, int> seq2Bin;
string method;