*/
#include "command.hpp"
-#include "globaldata.hpp"
/*
Evans, J., L. Sheneman, and J.A. Foster (2006) Relaxed Neighbor-Joining:
vector<string> setParameters();
string getCommandName() { return "clearcut"; }
string getCommandCategory() { return "Hypothesis Testing"; }
+
string getHelpString();
+ string getOutputPattern(string);
+ string getCitation() { return "Sheneman L, Evans J, Foster JA (2006). Clearcut: a fast implementation of relaxed neighbor joining. Bioinformatics 22: 2823-4. \nhttp://www.mothur.org/wiki/Clearcut"; }
+ string getDescription() { return "create a tree from a fasta or phylip file"; }
int execute();
void help() { m->mothurOut(getHelpString()); }