modified shhhercommand to make buildable with windows

[mothur.git] / clearcutcommand.cpp

diff --git a/clearcutcommand.cpp b/clearcutcommand.cpp
index 0d2da75284049cd377d9cf209de5d0eb44b4034c..a2d0aaa5331a402a538d253e4d1f00d7800fa77e 100644 (file)
--- a/clearcutcommand.cpp
+++ b/clearcutcommand.cpp
@@ -8,8 +8,13 @@
  */
 
 #include "clearcutcommand.h"
+#ifdef __cplusplus
+extern "C" {
+#endif
 #include "clearcut.h"
-
+#ifdef __cplusplus
+}
+#endif
 //**********************************************************************************************************************
 vector<string> ClearcutCommand::getValidParameters(){  
        try {
@@ -26,6 +31,7 @@ vector<string> ClearcutCommand::getValidParameters(){
 //**********************************************************************************************************************
 ClearcutCommand::ClearcutCommand(){    
        try {
+               abort = true;
                //initialize outputTypes
                vector<string> tempOutNames;
                outputTypes["tree"] = tempOutNames;