*/
#include "clearcutcommand.h"
+#ifdef __cplusplus
+extern "C" {
+#endif
#include "clearcut.h"
-
+#ifdef __cplusplus
+}
+#endif
//**********************************************************************************************************************
vector<string> ClearcutCommand::getValidParameters(){
try {
//**********************************************************************************************************************
ClearcutCommand::ClearcutCommand(){
try {
- //initialize outputTypes
+ abort = true; calledHelp = true;
vector<string> tempOutNames;
outputTypes["tree"] = tempOutNames;
outputTypes["matrixout"] = tempOutNames;
/**************************************************************************************/
ClearcutCommand::ClearcutCommand(string option) {
try {
- abort = false;
+ abort = false; calledHelp = false;
//allow user to run help
- if(option == "help") { help(); abort = true; }
+ if(option == "help") { help(); abort = true; calledHelp = true; }
else {
//valid paramters for this command
int ClearcutCommand::execute() {
try {
- if (abort == true) { return 0; }
+ if (abort == true) { if (calledHelp) { return 0; } return 2; }
//prepare filename
string outputName = outputDir + m->getRootName(m->getSimpleName(inputFile)) + "tre";