vector<string> setParameters();
string getCommandName() { return "classify.shared"; }
- string getCommandCategory() { return "OTU-Based Approaches"; }
-
+ string getCommandCategory() { return "OTU-Based Approaches"; }
string getHelpString();
- string getOutputPattern(string);
+ string getOutputPattern(string);
string getCitation() { return "http://www.mothur.org/wiki/Classify.shared\n"; }
- string getDescription() { return "description"; }
+ string getDescription() { return "implements the random forest machine learning algorithm to identify OTUs that can be used to differentiate between various groups of samples"; }
int execute();
void help() { m->mothurOut(getHelpString()); }
string outputDir;
vector<string> outputNames, Groups;
- string sharedfile, designfile, otupersplit, splitcriteria;
+ string sharedfile, designfile;
set<string> labels;
bool allLines;