changed groupfile in classify.seqs to reflect multiple fasta files

[mothur.git] / classifyseqscommand.h

diff --git a/classifyseqscommand.h b/classifyseqscommand.h
index 0ffd18c27c70084acd2cd2c0eb99d6d2055c44b0..639ae6543082a7162b270da16137078da5c8e362 100644 (file)
--- a/classifyseqscommand.h
+++ b/classifyseqscommand.h
@@ -43,12 +43,13 @@ private:
        vector<linePair*> lines;
        vector<string> fastaFileNames;
        vector<string> namefileNames;
+       vector<string> groupfileNames;
        map<string, int> nameMap;
        map<string, int>::iterator itNames;
        
        Classify* classify;
        
-       string fastaFileName, templateFileName, distanceFileName, namefile, search, method, taxonomyFileName, outputDir;
+       string fastaFileName, templateFileName, distanceFileName, namefile, search, method, taxonomyFileName, outputDir, groupfile;
        int processors, kmerSize, numWanted, cutoff, iters;
        float match, misMatch, gapOpen, gapExtend;
        bool abort, probs;